Get the source metadata of a dvobject

Returns where each source in a dvobject came from: release, dates, URLs, licence, attribution, the parsed files with their SHA-256 hashes, and the dbparser version that parsed them. A merged dvobject has one row per source. Unknown values are NA.

Usage

get_source_metadata(dvobject)

Arguments

dvobject

a dvobject returned by a parser or a merge function

Value

a tibble with one row per source and columns metadata_version, source, source_name, release, release_date, retrieved_at, source_url, licence, licence_url, attribution, files (a list column of data.frames with name and sha256) and parser. It has no rows when the dvobject carries no source metadata (e.g. one saved by an older dbparser version).

See also

Other utility: add_database_info(), get_genes_for_phenotype(), search_phenotypes(), show_dvobject_metadata(), subset_drugbank_dvobject(), subset_onsides_dvobject()

Examples

drugbank <- parseDrugBank(
  system.file("extdata", "drugbank_record_biotech.xml",
              package = "dbparser"))
#> Loading DrugBank DB from path: /github/home/R/x86_64-pc-linux-gnu-library/4.6/dbparser/extdata/drugbank_record_biotech.xml
#> Completed loading DrugBank DB into memory
#> ...........................................
#> parsing drugs elements
#> drugs information parsing has started
#> parsing drugs general information
get_source_metadata(drugbank)
#> # A tibble: 1 × 12
#>   metadata_version source   source_name release release_date retrieved_at
#>   <chr>            <chr>    <chr>       <chr>   <date>       <date>      
#> 1 1                drugbank DrugBank    5.1     2018-07-03   NA          
#> # ℹ 6 more variables: source_url <chr>, licence <chr>, licence_url <chr>,
#> #   attribution <chr>, files <list>, parser <chr>