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dendroNetwork 0.5.5

CRAN release: 2025-07-25

New features

Minor improvements

  • dendronetwork: it is now possible to choose which correlation to use for creating network(s): using the correlation after the Hollstein(1980) transformation r_hol or the correlation without any transformation (r). The default is now r_hol.

Bug Fixes

Deprecated and defunct

Documentation fixes

  • improved the documentation of the CPM en GN functions

  • corrected minor typos in the documentation.

Continuous integration

dendroNetwork 0.5.4

CRAN release: 2024-04-30

New features

Minor improvements

Bug Fixes

  • added global variables to prevent notes

  • added various files to build ignore

Deprecated and defunct

Documentation fixes

Continuous integration

dendroNetwork 0.5.3

New features

Minor improvements

Bug Fixes

Deprecated and defunct

Documentation fixes

  • added descriptions of Cytoscape in the readme and vignettes
  • added vignette: dendrochronological_data which describes the data to be used.
  • minor corrections

Continuous integration

dendroNetwork 0.5.2

New features

Minor improvements

  • added a CONTRIBUTING.md file for contribution guidelines
  • added check to determine if input graph is an igraph object for all functions that need an igraph as input
  • added check to determine if input tree-ring dataset is rwl object for sim_table

Bug Fixes

  • corrected bug in cyto_clean_styles()
  • corrected error in wuchwerte(). It is not using the anos1 dataset from dplR anymore
  • corrected error in cyto_create_gn_style and cyto_create_cpm_style
  • updated cyto_create_cpm_style because it was not working properly.

Deprecated and defunct

  • dev-folder removed, since this was not needed (created by biocthis)

Documentation fixes

  • update acknowledgements in readme and paper
  • corrected text of documentation in cor_mat_overlap()
  • added pkgdown site: https://ronaldvisser.github.io/dendroNetwork/
  • moved some images to man/figures
  • added Vignette on Cytoscape use
  • moved information for using big dataset to separate vignette
  • updated README: added more installation instructions
  • corrected examples in cyto_create_gn_style and cyto_create_cpm_style

Continuous integration

dendroNetwork 0.5.1

New features

Minor improvements

Bug Fixes

Deprecated and defunct

Documentation fixes

  • minor corrections to README
  • added codemeta.json using codemetar::write_codemeta()
  • added .github/CONTRIBUTING.md using usethis::use_tidy_contributing()
  • DESCRIPTION: added URL and BugReports to DESCRIPTION + package checks
  • correction in clique_community_names(_par) functions, due to [k] seen as link
  • added to cytoscape functions

Continuous integration

dendroNetwork 0.5.0

New features

First public release

Minor improvements

Bug Fixes

Deprecated and defunct

Documentation fixes

Continuous integration