Create Girvan-Newman communities style in Cytoscape
Source:R/cyto_create_gn_style.R
cyto_create_gn_style.Rd
Function to create a style in Cytoscape to visualise the communities in a network using the Girvan-Newman method for community detection. Each node is filled with a separate colour for each community. Before starting this function, Cytoscape must be up and running!
Arguments
- graph_input
the graph with the CPM communities
- gn_coms
GN communities in graph_input. This is the result of gn_names(). If this is not given this will be calculated in the function
- style_name
name of the output style in Cytoscape. If set to "auto", the style is derived from the name of the network and value for k
Examples
if (FALSE) { # \dontrun{
data(hol_rom)
sim_table_hol <- sim_table(hol_rom)
g_hol <- dendro_network(sim_table_hol)
g_hol_gn <- gn_names(g_hol)
cyto_create_graph(g_hol)
cyto_create_gn_style(g_hol, gn_coms = g_hol_gn)
} # }