There are a number of built-in functions in the `grainchanger`

package, with their usage outlined below. While it is possible to use user-defined functions within `winmove_agg`

, `nomove_agg`

, and `winmove`

, we welcome suggestions for additional functions. Please add as an issue - doing it this way means we can maximise the speed of the function.

All functions can also be used on their own, either on an object of class `winmove`

or `numeric`

.

When functions are used within `winmove_agg`

, `winmove`

, or directly on an object of class `winmove`

, they are calculated relative to within a moving window.

When functions are used within `nomove_agg`

all cells of `fine_dat`

within a given cell of `coarse_dat`

are aggregated using the function.

## Current functions

Function.Name | Description | Additional.arguments |
---|---|---|

prop | Calculate the proportion of a given class | lc_class (numeric) |

shdi | Calculate the Shannon diversity | lc_class (numeric) |

shei | Calculate the Shannon evenness | lc_class (numeric) |

var_range | Calculate the size of the range of values |

## Shannon diversity and evenness

Shannon diversity is calculated as \[SHDI = -\sum_{i = 1}^m p_i lnp_i\] where \(p_i\) is the proportion of a given class \(i\) of a total \(m\) classes.

Shannon evenness is calculated as \[SHEI = \frac{S}{ln(m)}\]

## Additional functions

We plan to add other useful functions to this small set of built-in functions, such as relevant metrics from FRAGSTATS.

We also welcome suggestions for additional functions. Please add as an issue - doing it this way means we can maximise the speed of the function.