Function reference • rentrez

All functions

entrez_citmatch(): Fetch pubmed ids matching specially formatted citation strings

entrez_db_links(): List available links for records from a given NCBI database

entrez_db_searchable(): List available search fields for a given database

entrez_db_summary(): Retrieve summary information about an NCBI database

entrez_dbs(): List databases available from the NCBI

entrez_fetch(): Download data from NCBI databases

entrez_global_query(): Find the number of records that match a given term across all NCBI Entrez databases

entrez_info(): Get information about EUtils databases

entrez_link(): Get links to datasets related to records from an NCBI database

entrez_post(): Post IDs to Eutils for later use

entrez_search(): Search the NCBI databases using EUtils

entrez_summary(): Get summaries of objects in NCBI datasets from a unique ID

extract_from_esummary(): Extract elements from a list of esummary records

linkout_urls(): Extract URLs from an elink object

parse_pubmed_xml(): Summarize an XML record from pubmed.

rentrez rentrez-package: rentrez

set_entrez_key(): Set the ENTREZ_KEY variable to be used by all rentrez functions