Documentation website: https://docs.ropensci.org/workloopR/

Accompanying paper in Journal of Open Source Software: https://doi.org/10.21105/joss.01856

Installation

We are not (yet) on CRAN but the package can be installed via:

Please note that vignettes are not built by default. To build vignettes as well, please use the following code:

devtools::install_github("ropensci/workloopR", build_vignettes = TRUE)

Overview

workloopR (pronounced “work looper”) provides functions for the import, transformation, and analysis of muscle physiology experiments in R. As the package’s title suggests, our initial motivation was to provide functions to analyze work loops. The work loop technique (Josephson 1985) is used in studies of muscle physiology to determine the mechanical work and power output of a muscle. Over the course of developing the package, we expanded this goal to also cover experiments that are often complementary to the work loop technique. There are three currently supported experiment types: work loop, simple twitch, and tetanus.

Figure 1

For more on work loops, we recommend a great review paper by Ahn (2012) as well as this Wikipedia page.

Graphical overview

Recommended functions and vignettes:

Figure 2

Citation

The preferred way to cite workloopR is:

Baliga VB and Senthivasan S. 2019. workloopR: Analysis of work loops and other data from muscle physiology experiments in R. Journal of Open Source Software, 4(43), 1856, https://doi.org/10.21105/joss.01856

Issues/questions/requests

Feedback is welcome! Please feel free to get in touch with either Vikram (@vbaliga) or Shree (@shreeramsenthi).

We are happy to take feature requests, especially those that involve data import from non-ddf file types. Please see our Issues page for templates that you can use.

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License

GPL (>= 3) + file LICENSE

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