Import GMT (Gene Matrix Transposed) filesSource:
The GMT (Gene Matrix Transposed) file format is a tab delimited file format that describes groups of genes. In this format, each row represents a group. Each group is described by a name, a description, and the genes in it.
File name of the GMT file.
GMT file field separator, by default tabs.
Other arguments passed to
The file format is defined by the Broad Institute here
gmtFile <- system.file( package = "BaseSet", "extdata", "hallmark.gene.symbol.gmt" ) gs <- getGMT(gmtFile) nRelations(gs) #>  7324 nElements(gs) #>  4386 nSets(gs) #>  50