Run all the basic Barrett's functions

Function to encapsulate all the Barrett's functions together. This includes the Prague score and the worst pathological grade and then feeds both of these things into the follow up function. The output is a dataframe with all the original data as well as the new columns that have been created.

Usage

BarrettsAll(
  Endodataframe,
  EndoReportColumn,
  EndoReportColumn2,
  Pathdataframe,
  PathColumn
)

Arguments

Endodataframe

endoscopy dataframe of interest

EndoReportColumn

Endoscopy report field of interest as a string vector

EndoReportColumn2

Second endoscopy report field of interest as a string vector

Pathdataframe

pathology dataframe of interest

PathColumn

Pathology report field of interest as a string vector

Value

Newdf

See also

Other Disease Specific Analysis - Barretts Data: BarrettsBxQual(), BarrettsParisEMR(), Barretts_FUType(), Barretts_PathStage(), Barretts_PragueScore()

Examples

Barretts_df <- BarrettsAll(Myendo, "Findings", "OGDReportWhole", Mypath, "Histology")
#> Warning: There were 6 warnings in `mutate()`.
#> The first warning was:
#> ℹ In argument: `FU_Type = case_when(...)`.
#> Caused by warning:
#> ! NAs introduced by coercion
#> ℹ Run `dplyr::last_dplyr_warnings()` to see the 5 remaining warnings.