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Run ReLTER in a Docker container

Paolo Tagliolato

Alessandro Oggioni

Source: vignettes/rocker_ReLTER.Rmd
rocker_ReLTER.Rmd

rocker_ReLTER

Docker image for the ReLTER package.

This image allows you to run RStudio with ReLTER preinstalled, directly through Docker.

About

The rocker_ReLTER image extends a standard rocker-based RStudio server image by installing the ReLTER package.

It provides a reproducible environment for research and development, ensuring that dependencies and system libraries are already configured.

Install a different branch of ReLTER package

To install a different branch of the package, edit the dockerfile and modify the line 57, replacing with the branch you need:

R -e "devtools::install_github('https://github.com/ropensci/ReLTER', ref = '<branchName>', dependencies = FALSE)"

Build the image 

docker build -t rocker_relter .

Usage

Run locally on port 8080 (you may choose any port you prefer). Replace yourpassword with your preferred password:

docker run -d -e PASSWORD=yourpassword -p 8080:8787 rocker_relter

Then open your browser at http://localhost:8080 and log in with: • user: rstudio • password: yourpassword

Preserve your work (using a Docker volume)

By default, files created inside the container are lost when the container is stopped. To preserve your work, map a local directory (for example the current one $(pwd)) to the RStudio home directory inside the container:

docker run -d -v $(pwd):/home/rstudio -e PASSWORD=yourpassword -p 8080:8787 rocker_relter

This way, any files you create will remain available on your host machine.

Precompiled image on Docker Hub

Please remember that this image is created with the previous version of the ReLTER package, so it may not be up to date with the latest changes.

Instead of building the image locally, you can use the precompiled one available on Docker Hub:

docker pull ptagliolato/rocker_relter
docker run -d -e PASSWORD=yourpassword -p 8080:8787 ptagliolato/rocker_relter