Package index

All functions

get_site_info() stable

Obtain details about an eLTER site.

get_activity_info() stable

Obtain the information about of an eLTER activity.

get_dataset_info() stable

Obtain the information about of an eLTER dataset.

get_location_info() stable

Obtain the information about of an eLTER location.

get_sensor_info() experimental

Obtain the information about of an eLTER sensor.

get_site_EcoDataCube() stable

Acquire various raster layers from EcoDataCube EU and crop to an eLTER site boundary.

EDC_construct_full_url() stable

Construct full url for download

get_site_speciesOccurrences() stable

Trims by eLTER site the species occurrence from different sources

get_sites_interactive() experimental

Select sites by choosing a 3d bounding box through an interactive GUI.

get_sites_within_3d_bounding_box() experimental

select sites within a 3d bounding box

get_sites_within_radius() experimental

Get all sites within a given distance of a point location

get_network_sites() stable

Retrieve a list of sites in an eLTER Network.

get_zenodo_data() experimental

Obtain the data from a dataset deposited in Zenodo record.

get_deims_API_version() stable

Get version of DEIMS-SDR API

get_deims_base_url() stable

Get DEIMS-SDR base URL

set_deims_base_url() stable

Set DEIMS-SDR API base URL

package_settings stable

Package settings that can be changed by the user

produce_network_points_map() stable

Provide a map (image) of sites in an eLTER Network.

produce_site_map() stable

Provide a map object of a sites LTER.

produce_site_qrcode() stable

Obtain the QRCode of any DEIMS-SDR entities.

produce_site_observedProperties_pie() stable

Produce a pie chart of the observed properties collected in a site LTER.

produce_site_observedProperties_waffle() stable

Produce a waffle chart of the observed properties collected in a site LTER.

taxon_id_pesi() stable

Provide a taxon ID LSID to a taxon list.

taxon_id_worms() stable

Enrich and certify a list of species names by comparing with WoRMS.

map_occ_gbif2elter() experimental

Harmonize outputs of get_site_speciesOccurrence and map them into eLTER reporting format

map_occ_inat2elter() experimental

Harmonize outputs of get_site_speciesOccurrence and map them into eLTER reporting format

map_occ_obis2elter() experimental

Harmonize outputs of get_site_speciesOccurrence and map them into eLTER reporting format

save_occ_eLTER_reporting_Archive() experimental

Creates an archive with files following the eLTER reportingFormat

eLTER_data_reporting_format experimental

eLTER Data Reporting Format (DRF)

reporting_produce_data_object_v1.3() experimental

Compose an eLTER Data Reporting Format object

reporting_produce_data_object_v2.0() experimental

Compose an eLTER Data Reporting Format object

reporting_save_archive() experimental

Creates an archive with files following the eLTER reportingFormat