Function reference • ReLTER

All functions

get_site_info(): Obtain details about an eLTER site.

get_sensor_observed_properties(): Obtain the observed properties measured by a sensor.

get_sensor_info(): Obtain the information about of an eLTER sensor.

get_activity_info(): Obtain the information about of an eLTER activity.

get_dataset_info(): Obtain the information about of an eLTER dataset.

get_site_ODS(): Acquire various raster layers from ODS Europe and crops to an eLTER site boundary.

get_site_speciesOccurrences(): Trims by eLTER site the species occurrence from different sources

get_network_envcharacts(): Obtain a list of all Environmental Characteristics of sites in an eLTER Network.

get_network_observedProperties(): Obtain a list of all the observed properties of sites in an eLTER Network.

get_network_research_topics(): Obtain a list of Research Topics handled in an eLTER Network.

get_network_related_resources(): Obtain information about the Related Resources (dataset and activity) of a eLTER Network.

get_network_sites(): Retrieve a list of sites in an eLTER Network.

get_ilter_envcharacts(): Obtain a list of all Environmental Characteristics of ILTER sites.

get_ilter_generalinfo(): Download information of all ILTER sites or a subset of ILTER sites.

get_ilter_observedProperties(): Obtain information about the observed properties collected of all sites ILTER.

get_ilter_research_topics(): Obtain the information about the Research Topics of ILTER sites.

get_sos_foi(): Obtain the information about the feature of interest.

get_sos_obs(): Obtain the observations from a Sensor Observation Service (SOS).

get_sos_procedure_info(): Obtain the information from a sensor.

get_sos_procedurelist(): List the procedures of a Sensor Observations Service (SOS).

get_zenodo_data(): Obtain the data from a dataset deposited in Zenodo record.

get_deims_API_version(): Get version of DEIMS-SDR API

get_deims_base_url(): Get DEIMS-SDR base URL

set_deims_base_url(): Set DEIMS-SDR API base URL

package_settings: Package settings that can be changed by the user

produce_network_points_map(): Provide a map (image) of sites in an eLTER Network.

produce_site_map(): Provide a map object of a sites LTER.

produce_site_qrcode(): Obtain the QRCode of any DEIMS-SDR entities.

produce_site_observedProperties_pie(): Produce a pie chart of the observed properties collected in a site LTER.

produce_site_observedProperties_waffle(): Produce a waffle chart of the observed properties collected in a site LTER.

produce_zenodo_record(): Create a record in Zenodo

produce_zenodo_record_from_elter_reporting(): Create a record in Zenodo from eLTER data reporting format

elter_write_rdata(): eLTER write Rdata data

taxon_id_pesi(): Provide a taxon ID LSID to a taxon list.

taxon_id_worms(): Enrich and certify a list of species names by comparing with Worms.

map_occ_gbif2elter(): Harmonize outputs of get_site_speciesOccurrence and map them into eLTER reporting format

map_occ_inat2elter(): Harmonize outputs of get_site_speciesOccurrence and map them into eLTER reporting format

map_occ_obis2elter(): Harmonize outputs of get_site_speciesOccurrence and map them into eLTER reporting format

save_occ_eLTER_reporting_Archive(): Creates an archive with files following the eLTER reportingFormat

reporting_compose_file_name(): eLTER reporting format naming convention for files

reporting_produce_data_object_v1.3(): Compose an eLTER Data Reporting Format object

reporting_save_archive(): Creates an archive with files following the eLTER reportingFormat