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Get Significant Single Tissue Sqtls

Source: R/get_significant_single_tissue_sqtls.R
get_significant_single_tissue_sqtls.Rd

Retrieve Single Tissue sQTL Data.

  • This service returns single tissue sQTL data for the given genes, from a specified dataset.

  • Results may be filtered by tissue

  • By default, the service queries the latest GTEx release.

The retrieved data is split into pages with items_per_page entries per page

GTEx Portal API documentation.

Usage

get_significant_single_tissue_sqtls(
  gencodeIds,
  variantIds = NULL,
  tissueSiteDetailIds = NULL,
  datasetId = "gtex_v8"
)

Arguments

gencodeIds

A character vector of Versioned GENCODE IDs, e.g. c("ENSG00000132693.12", "ENSG00000203782.5").

variantIds

Character vector. Gtex variant IDs.

tissueSiteDetailIds

Character vector of IDs for tissues of interest. Can be GTEx specific IDs (e.g. "Whole_Blood"; use get_tissue_site_detail() to see valid values) or Ontology IDs.

datasetId

String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot".

Value

A tibble

See also

Other Static Association Endpoints: get_eqtl_genes(), get_fine_mapping(), get_independent_eqtl(), get_multi_tissue_eqtls(), get_significant_single_tissue_eqtls(), get_significant_single_tissue_eqtls_by_location(), get_significant_single_tissue_ieqtls(), get_significant_single_tissue_isqtls(), get_sqtl_genes()

Examples

if (FALSE) { # \dontrun{
# search by gene
get_significant_single_tissue_sqtls(gencodeIds = c("ENSG00000065613.9",
                                                   "ENSG00000203782.5"))
} # }