Package index • rmangal

Explore database

Explore the content of each datatables and return mgSearch* objects

search_datasets(): Query datasets

search_interactions(): Query interactions

search_networks() search_networks_sf(): Query networks

search_nodes(): Query nodes

search_references(): Query references

search_taxonomy(): Query taxonomy

avail_type(): List interactions type contains in mangal-db

Retrieve networks

Get networks ( mgNetwork or mgNetworksCollection) from search_* functions

get_collection(): Get a collection of networks

get_network_by_id() get_network_by_id_indiv() print(<mgNetwork>) print(<mgNetworksCollection>) summary(<mgNetwork>) summary(<mgNetworksCollection>): Retrieve network information, nodes, edges and references for a given set of Mangal network IDs

get_citation(): Retrieve all references pertaining to the networks collection or individual network

Analyze networks

Analyze or manipulate mgNetwork or mgNetworksCollection

as.igraph(<mgNetwork>) as.igraph(<mgNetworksCollection>): Coerce mgNetworksCollection or mgNetwork objects to igraph objects.

combine_mgNetworks(): Combine Mangal networks

Cache

Manipulate rmangal cache

clear_cache_rmangal(): Clear memoise cache