Reference

Explore database

Explore the content of each datatables and return mgSearch* objects

search_datasets()

Query datasets

search_interactions()

Query interactions

search_networks() search_networks_sf()

Query networks

search_nodes()

Query nodes

search_references()

Query references

search_taxonomy()

Query taxonomy

avail_type()

List interactions type contains in mangal-db

Retrieve networks

Get networks ( mgNetwork or mgNetworksCollection) from search_* functions

get_collection()

Get a collection of networks

get_network_by_id() get_network_by_id_indiv() print(<mgNetwork>) print(<mgNetworksCollection>) summary(<mgNetwork>) summary(<mgNetworksCollection>)

Retrieve network informations, nodes, edges and references for a given set of Mangal network IDs

get_citation()

Retrieve all references pertaining to the networks collection or individual network

Analyze networks

Analyze or manipulate mgNetwork or mgNetworksCollection

as.igraph(<mgNetwork>) as.igraph(<mgNetworksCollection>)

Coerce mgNetworksCollection or mgNetwork objects to igraph objects.

combine_mgNetworks()

Combine Mangal networks

Cache

Manipulate rmangal cache

clear_cache_rmangal()

Clear memoise cache