Developer info: Writing custom steps
Kirill Müller, Patrick Schratz
Source:vignettes/custom-steps.Rmd
custom-steps.RmdMost important steps running on CI systems are already implemented in {tic}. The following vignette shows how new steps can be created and how {tic} defines them. Internally, all steps are defined using the R6 class system. If you are not familiar with object-oriented programming using R6, the R6 chapter in Advanced R is a good place to start.
In most cases there should be no need to write steps on your own, because step_run_code() can be used to run arbitrary code when preparing and running the step, and custom conditions in tic.R can be used to trigger the step. However, if you have the need for a repeated use of specific combinations of add_code_step(), please let us know (by opening an issue) so that we can discuss whether it makes sense to implement it as a custom step.
The TicStep class
A step is a subclass of the TicStep class. The step_... functions in {tic} are forwarded to the new() methods of the corresponding R6 class objects (and from there to initialize() member functions). We recommend following the same pattern for your custom steps.
The TicStep class implements the public methods check(), prepare(), and run(). These methods must be callable without arguments. This means that you only need to override the methods you need; if you don’t need a check() or prepare() method you can leave it out. The following sections describe these methods and show examples.
The prepare() method
This method will be called by prepare_all_stages(). It is intended to run in the before_script phase of the CI run. This method should install all dependent packages that the step requires, which then can be cached by the CI system. You also may include further preparation code here. For example step_rcmdcheck verifies that the R packages rcmdcheck and remotes are installed:
RCMDcheck$public_methods$prepareThe run() method
This method executes the step. When a step is added to a stage, run() will be called when the stage is executed. For example, the run() function of class RCMDcheck looks as follows:
RCMDcheck$public_methods$runThe check() method
This method checks whether the step is actually run. It returns a logical scalar. The step_write_text_file() function is an example step with the following implementation of the check() method:
WriteTextFile$public_methods$checkA minimal example
You can take a look at a pull request that implements a new step.
The most minimalist version is the “Hello World” example step. This class only contains a run() method which does nothing more than printing “Hello World” to the console. It is initialized by calling step_hello_world() which creates a new instance of this class.
HelloWorld <- R6Class(
"HelloWorld",
inherit = TicStep,
public = list(
run = function() {
print("Hello, world!")
}
)
)
#' Step: Hello, world!
#'
#' The simplest step possible: prints "Hello, world!" to the console when run, does not require
#' any preparation.
#' This step may be useful to test a \pkg{tic} setup or as a starting point when implementing a
#' custom step.
#'
#' @family steps
#' @export
step_hello_world <- function() {
HelloWorld$new()
}Further information on the R6 class system
If you are unfamiliar with R6 classes, here is a short guidance how the arguments are passed along: Consider the step_rcmdcheck() function (link to source):
RCMDcheck <- R6Class( # nolint
"RCMDcheck",
inherit = TicStep,
public = list(
initialize = function(warnings_are_errors = NULL, notes_are_errors = NULL,
args = c("--no-manual", "--as-cran"),
build_args = "--force", error_on = "warning",
repos = repo_default(), timeout = Inf,
check_dir = NULL) {
if (!is.null(notes_are_errors)) {
warning_once(
'`notes_are_errors` is deprecated, please use `error_on = "note"`'
)
if (notes_are_errors) {
error_on <- "note"
}
} else if (!is.null(warnings_are_errors)) {
warning_once(
"`warnings_are_errors` is deprecated, ",
'please use `error_on = "warning"`'
)
if (warnings_are_errors) {
error_on <- "warning"
}
}
private$args <- args
private$build_args <- build_args
private$error_on <- error_on
private$repos <- repos
private$timeout <- timeout
private$check_dir <- check_dir
super$initialize()
},
run = function() {
# Don't include vignettes if --no-build-vignettes is included
if ("--no-build-vignettes" %in% private$args) {
cat("^vignettes$\n", file = ".Rbuildignore", append = TRUE)
}
withr::with_envvar(
c(
# Avoid large version components
"_R_CHECK_CRAN_INCOMING_" = "FALSE",
# Don't check system clocks (because the API used there is flaky)
"_R_CHECK_SYSTEM_CLOCK_" = "FALSE",
# Don't force suggests
"_R_CHECK_FORCE_SUGGESTS_" = "FALSE",
# Work around missing qpdf executable
"R_QPDF" = if (Sys.which("qpdf") == "") "true"
),
res <- rcmdcheck::rcmdcheck(
args = private$args, build_args = private$build_args,
error_on = "never",
repos = private$repos,
timeout = private$timeout,
check_dir = private$check_dir
)
)
print(res)
if (length(res$errors) > 0) {
stopc("Errors found in rcmdcheck::rcmdcheck().")
}
if (private$error_on %in% c("warning", "note") && length(res$warnings) > 0) {
stopc(
"Warnings found in rcmdcheck::rcmdcheck(), ",
'and `errors_on = "warning"` is set.'
)
}
if (private$error_on == "note" && length(res$notes) > 0) {
stopc(
"Notes found in rcmdcheck::rcmdcheck(), ",
'and `errors_on = "note"` is set.'
)
}
},
prepare = function() {
verify_install("rcmdcheck")
super$prepare()
}
),
private = list(
args = NULL,
build_args = NULL,
error_on = NULL,
repos = NULL,
timeout = NULL,
check_dir = NULL
)
)Here, a new instance of the defined R6 class RCMDcheck is initiated with RCMDcheck$new(). The arguments to step_rcmdcheck() are passed on to the initialize() function of the R6 class. Here, the arguments are assigned to the “private” members (e.g. private$args). Next, these private members are used in the run() function which carries out the actual work.