Display qPCR plate plan with sample_id, target_id, prep_type per well

Display qPCR plate plan with sample_id, target_id, prep_type per well

Usage

display_plate_qpcr(plate)

Arguments

plate

tibble with variables well_col, well_row, sample_id, target_id, prep_type. Output from label_plate_rowcol.

Value

ggplot object; major output is to plot it

See also

Other plate creation functions: create_blank_plate(), create_colkey_4diln_2ctrl_in_24(), create_colkey_6_in_24(), create_colkey_6diln_2ctrl_in_24(), create_rowkey_4_in_16(), create_rowkey_8_in_16_plain(), display_plate_value(), display_plate(), label_plate_rowcol(), make_row_names_echo1536(), make_row_names_lc1536()

Examples

# create basic 6-well plate
basic_plate <- 
    label_plate_rowcol(plate = create_blank_plate(well_row = LETTERS[1:2],
                                                  well_col = 1:3),
                       rowkey = tibble(well_row = factor(LETTERS[1:2]),
                                       target_id = c("T_A","T_B")),
                       colkey = tibble(well_col = factor(1:3),
                                       sample_id = c("S_1","S_2", "S_3"),
                                       prep_type = "+RT"))

# display basic plate
display_plate_qpcr(basic_plate)


# create full 384 well plate
full_plate <- label_plate_rowcol(create_blank_plate(), 
                                  create_rowkey_8_in_16_plain(target_id = c("T_1", "T_2",
                                                                            "T_3", "T_4", 
                                                                            "T_5", "T_6",
                                                                            "T_7", "T_8")), 
                                  create_colkey_6diln_2ctrl_in_24() %>% 
                                      dplyr::mutate(sample_id = paste0(dilution_nice,
                                                                       "_",
                                                                       tech_rep)))

# display full plate
display_plate_qpcr(full_plate)