Drops all clusters except those identified by user.
See also
Other tools-public:
calc_mad(),
calc_wrdfrq(),
drop_by_rank(),
drop_sqs(),
get_clstr_slot(),
get_nsqs(),
get_ntaxa(),
get_sq_slot(),
get_stage_times(),
get_tx_slot(),
get_txids(),
is_txid_in_clstr(),
is_txid_in_sq(),
list_clstrrec_slots(),
list_ncbi_ranks(),
list_seqrec_slots(),
list_taxrec_slots(),
plot_phylota_pa(),
plot_phylota_treemap(),
read_phylota(),
write_sqs()
Examples
data("dragonflies")
# specify cids to *keep*
random_cids <- sample(dragonflies@cids, 100)
# drop an entire cluster
nbefore <- length(dragonflies@cids)
dragonflies <- drop_clstrs(phylota = dragonflies, cid = random_cids)
nafter <- length(dragonflies@cids)
# now there are only 100 clusters
(nafter < nbefore)
#> [1] TRUE