Checks if given txid is represented by any of the sequences of a cluster by searching through all the sequence search organism lineages.
See also
Other tools-public:
calc_mad(),
calc_wrdfrq(),
drop_by_rank(),
drop_clstrs(),
drop_sqs(),
get_clstr_slot(),
get_nsqs(),
get_ntaxa(),
get_sq_slot(),
get_stage_times(),
get_tx_slot(),
get_txids(),
is_txid_in_sq(),
list_clstrrec_slots(),
list_ncbi_ranks(),
list_seqrec_slots(),
list_taxrec_slots(),
plot_phylota_pa(),
plot_phylota_treemap(),
read_phylota(),
write_sqs()
Examples
data(tinamous)
cid <- tinamous@cids[[1]]
clstr <- tinamous[[cid]]
sq <- tinamous[[clstr@sids[[1]]]]
txid <- sq@txid
# expect true
is_txid_in_clstr(phylota = tinamous, txid = txid, cid = cid)
#> [1] TRUE