Checks if given txid is represented by any of the sequences of a cluster by searching through all the sequence search organism lineages.
See also
Other tools-public:
calc_mad()
,
calc_wrdfrq()
,
drop_by_rank()
,
drop_clstrs()
,
drop_sqs()
,
get_clstr_slot()
,
get_nsqs()
,
get_ntaxa()
,
get_sq_slot()
,
get_stage_times()
,
get_tx_slot()
,
get_txids()
,
is_txid_in_sq()
,
list_clstrrec_slots()
,
list_ncbi_ranks()
,
list_seqrec_slots()
,
list_taxrec_slots()
,
plot_phylota_pa()
,
plot_phylota_treemap()
,
read_phylota()
,
write_sqs()
Examples
data(tinamous)
cid <- tinamous@cids[[1]]
clstr <- tinamous[[cid]]
sq <- tinamous[[clstr@sids[[1]]]]
txid <- sq@txid
# expect true
is_txid_in_clstr(phylota = tinamous, txid = txid, cid = cid)
#> [1] TRUE