Package index • taxlist

All functions

add_parent() add_trait() add_level() replace_view() taxlist2taxmap() taxmap2taxlist() tnrs(): Deprecated functions

Easplist: List of vascular plants from East Africa

`[`(<taxlist>) `$`(<taxlist>): Extract or Replace Parts of taxlist Objects

accepted_name() `accepted_name<-`() synonyms() basionym() `basionym<-`() `change_concept<-`(): Manage accepted names, synonyms and basionyms

add_concept() update_concept(): Add new taxonomic concepts into taxlist objects

backup_object() sort_backups() load_last(): Make and load backups of R objects

clean(): Delete orphaned records

clean_strings(): Cleaning character strings.

S4_to_list(): Coerce taxlist objects to lists.

count_taxa(): Count taxa within a taxlist object.

df2taxlist(): Convert data frames and strings into taxlist objects

dissect_name(): Dissect Scientific Names into their Elements

get_children() get_parents(): Retrieve children or parents of taxon concepts

id_generator() id_solver(): Generate Identifiers

indented_list(): Print hierarchical structure in indented lists

insert_rows(): Insert additional rows to a data frame.

levels() `levels<-`(): Set and retrieves hierarchical levels

match_names(): Search matchings between character and taxlist objects

matched_names-class: Names matched with a reference taxonomic list

merge_taxa(): Merge concepts or move names

merge_to_parent(): Merge taxa to their respective parents

parents(): Retrieve parents for specific concepts

print_name(): Format usage names for publications

prune_levels(): Prune not used taxonomic ranks

reindex() `reindex<-`(): Re-index elements of taxlist objects

replace_x() replace_idx() replace_na(): Data manipulation.

sort_taxa(): Sort taxa for further print

subset(<taxlist>): Subset method for taxlist objects

summary(<taxlist>) show(<taxlist>) print(<taxlist>): Print overviews for taxlist Objects and their content

tax2traits(): Set taxonomic information as taxon traits

taxlist-class: An S4 class to represent taxonomic lists.

taxlist2df(): Coerce taxlist objects to data frames

taxon_names() `taxon_names<-`() add_synonym() update_name() delete_name(): Handle information on taxon usage names.

taxon_relations() `taxon_relations<-`() update_concept(<taxlist>,<numeric>): Retrieve or replace slot taxonRelations in taxlist objects

taxon_traits() `taxon_traits<-`() update_trait(): Manipulation of taxon traits in taxlist objects.

taxon_views() `taxon_views<-`() add_view(): Management of concept views in taxonomic lists.

tv2taxlist(): Import species lists from Turboveg databases