Skip to contents

All functions

add_parent() add_trait() add_level() replace_view() taxlist2taxmap() taxmap2taxlist() tnrs()
Deprecated functions
Easplist
List of vascular plants from East Africa
`[`(<taxlist>) `$`(<taxlist>)
Extract or Replace Parts of taxlist Objects
accepted_name() `accepted_name<-`() synonyms() basionym() `basionym<-`() `change_concept<-`()
Manage accepted names, synonyms and basionyms
add_concept() update_concept()
Add new taxonomic concepts into taxlist objects
backup_object() sort_backups() load_last()
Make and load backups of R objects
clean()
Delete orphaned records
clean_strings()
Cleaning character strings.
S4_to_list()
Coerce taxlist objects to lists.
count_taxa()
Count taxa within a taxlist object.
df2taxlist()
Convert data frames and strings into taxlist objects
dissect_name()
Dissect Scientific Names into their Elements
get_children() get_parents()
Retrieve children or parents of taxon concepts
id_generator() id_solver()
Generate Identifiers
indented_list()
Print hierarchical structure in indented lists
levels() `levels<-`()
Set and retrieves hierarchical levels
match_names()
Search matchings between character and taxlist objects
matched_names-class
Names matched with a reference taxonomic list
merge_taxa()
Merge concepts or move names
merge_to_parent()
Merge taxa to their respective parents
print_name()
Format usage names for publications
prune_levels()
Prune not used taxonomic ranks
replace_x() replace_idx() replace_na() insert_rows()
Data manipulation.
subset(<taxlist>)
Subset method for taxlist objects
summary(<taxlist>) show(<taxlist>) print(<taxlist>)
Print overviews for taxlist Objects and their content
tax2traits()
Set taxonomic information as taxon traits
taxlist-class
An S4 class to represent taxonomic lists.
taxlist taxlist-package
taxlist: Handling taxonomic lists.
taxlist2df()
Coerce taxlist objects to data frames
taxon_names() `taxon_names<-`() add_synonym() update_name() delete_name()
Handle information on taxon usage names.
taxon_relations() `taxon_relations<-`() update_concept(<taxlist>,<numeric>)
Retrieve or replace slot taxonRelations in taxlist objects
taxon_traits() `taxon_traits<-`() update_trait()
Manipulation of taxon traits in taxlist objects.
taxon_views() `taxon_views<-`() add_view()
Management of concept views in taxonomic lists.
tv2taxlist()
Import species lists from Turboveg databases