Package index • auk

EBD Objects

auk_ebd(): Reference to eBird data file
auk_sampling(): Reference to eBird sampling event file

Process Text Files

auk_clean(): Clean an eBird data file (Deprecated)
auk_select(): Select a subset of columns
auk_split(): Split an eBird data file by species

Filter

auk_bbox(): Filter the eBird data by spatial bounding box
auk_bcr(): Filter the eBird data by Bird Conservation Region
auk_breeding(): Filter to only include observations with breeding codes
auk_complete(): Filter out incomplete checklists from the eBird data
auk_country(): Filter the eBird data by country
auk_county(): Filter the eBird data by county
auk_date(): Filter the eBird data by date
auk_distance(): Filter eBird data by distance travelled
auk_duration(): Filter the eBird data by duration
auk_exotic(): Filter the eBird data by exotic code
auk_extent(): Filter the eBird data by spatial extent
auk_filter(): Filter the eBird file using AWK
auk_last_edited(): Filter the eBird data by last edited date
auk_observer(): Filter the eBird data by observer
auk_project(): Filter the eBird data by project code
auk_protocol(): Filter the eBird data by protocol
auk_species(): Filter the eBird data by species
auk_state(): Filter the eBird data by state
auk_time(): Filter the eBird data by checklist start time
auk_year(): Filter the eBird data to a set of years

Pre-process

auk_rollup(): Roll up eBird taxonomy to species
auk_unique(): Remove duplicate group checklists

Import

auk_zerofill() collapse_zerofill(): Read and zero-fill an eBird data file
read_ebd() read_sampling(): Read an EBD file

Modeling

filter_repeat_visits(): Filter observations to repeat visits for hierarchical modeling
format_unmarked_occu(): Format EBD data for occupancy modeling with unmarked

Data

bcr_codes: BCR Codes
ebird_states: eBird States
ebird_taxonomy: eBird Taxonomy
valid_protocols: Valid Protocols

Path Management

auk_get_awk_path(): OS specific path to AWK executable
auk_get_ebd_path(): Return EBD data path
auk_set_awk_path(): Set a custom path to AWK executable
auk_set_ebd_path(): Set the path to EBD text files

Helpers

auk_ebd_version(): Get the EBD version and associated taxonomy version
auk_version(): Versions of auk, the EBD, and the eBird taxonomy
ebird_species(): Lookup species in eBird taxonomy
get_ebird_taxonomy(): Get eBird taxonomy via the eBird API
process_barcharts(): Process eBird bar chart data