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Use arrange to extract the columns of a TidySet object. You can use activate with filter or use the specific function. The S3 method filters using all the information on the TidySet.

Usage

# S3 method for class 'TidySet'
arrange(.data, ...)

arrange_set(.data, ...)

arrange_element(.data, ...)

arrange_relation(.data, ...)

Arguments

.data

The TidySet object

...

Comma separated list of variables names or expressions integer column position to be used to reorder the TidySet.

Value

A TidySet object

Examples

relations <- data.frame(
    sets = c(rep("A", 5), "B", rep("A2", 5), "B2"),
    elements = rep(letters[seq_len(6)], 2),
    fuzzy = runif(12)
)
a <- tidySet(relations)
a <- mutate_element(a,
    type = c(rep("Gene", 4), rep("lncRNA", 2))
)

b <- arrange(a, desc(type))
elements(b)
#>   elements   type
#> 1        e lncRNA
#> 2        f lncRNA
#> 5        a   Gene
#> 6        b   Gene
#> 7        c   Gene
#> 8        d   Gene
b <- arrange_element(a, elements)
elements(b)
#>   elements   type
#> 1        a   Gene
#> 2        b   Gene
#> 3        c   Gene
#> 4        d   Gene
#> 5        e lncRNA
#> 6        f lncRNA
# Arrange sets
arrange_set(a, sets)
#>    elements sets      fuzzy   type
#> 1         a    A 0.70643384   Gene
#> 2         b    A 0.94857658   Gene
#> 3         c    A 0.18033877   Gene
#> 4         d    A 0.21689988   Gene
#> 5         e    A 0.68016292 lncRNA
#> 6         f    B 0.49884561 lncRNA
#> 7         a   A2 0.64167935   Gene
#> 8         b   A2 0.66028435   Gene
#> 9         c   A2 0.09602416   Gene
#> 10        d   A2 0.76560016   Gene
#> 11        e   A2 0.76967480 lncRNA
#> 12        f   B2 0.99071231 lncRNA